PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G19870.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family AP2
Protein Properties Length: 420aa    MW: 46383 Da    PI: 8.2095
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G19870.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.45.5e-1674133155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s+++GV++++++gr++A+++d  s+n    k+ k+++lg ++ +e Aa+a++ a++k++g
  LPERR05G19870.1  74 SRFRGVSRHRWTGRFEAHLWDkNSWNPtqrKKgKQVYLGAYDEEEAAARAYDLAALKYWG 133
                      789******************888855666447*************************98 PP

2AP251.23.1e-16176227155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV +++++grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  LPERR05G19870.1 176 SKYRGVARHHQNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYKG 227
                      89****************99966...3.6***********************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.8E-1274133IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-1674142IPR016177DNA-binding domain
SMARTSM003801.1E-2475147IPR001471AP2/ERF domain
PROSITE profilePS5103219.80975141IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-1575142IPR001471AP2/ERF domain
PfamPF008473.9E-11176227IPR001471AP2/ERF domain
CDDcd000181.33E-24176235No hitNo description
SuperFamilySSF541712.75E-17176236IPR016177DNA-binding domain
SMARTSM003801.7E-26177241IPR001471AP2/ERF domain
PROSITE profilePS5103218.979177235IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-17177235IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MDHHSIMMVK SEIETYSGSS PAMIINAPEG GAEVGPVVRR RRRDPSLLAP INGETNGGAI  60
GKTSLTGITV KRSSRFRGVS RHRWTGRFEA HLWDKNSWNP TQRKKGKQVY LGAYDEEEAA  120
ARAYDLAALK YWGPTTYTNF PVMDYEKELK IMENLTKEEY LASLRRKSSG FSRGVSKYRG  180
VARHHQNGRW EARIGRVFGN KYLYLGTYST QEEAARAYDI AAIEYKGVNA VTNFDLRSYI  240
TWLKPTPTPV AMNPEALAMQ IPADHFIPME THMMMIPQNN PFISDHNAPT LAGDGSGSSS  300
SNQEASMMIS PNGSRKRGSS TALSLLLKSS MFRQLVEKNP DAGEETGGEI SRELGAHPGE  360
GYEYHNFFQG VAAPEICDLL SSGNVHASSS VGFEGDIACF GDGDRTAWNG FGSMQSLQLQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199107PTQRKKGKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6851120.0AY685112.1 Oryza sativa (japonica cultivar-group) transcription factor AP2D4 (AP2D4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015692677.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A0D9WJ350.0A0A0D9WJ35_9ORYZ; Uncharacterized protein
STRINGOB05G31600.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41623473
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.32e-79AP2 family protein